Is there a built-in to convert a RegularExpression to StringExpression?

Questions
1

If not, what is the StringExpression equivalent of this RegularExpression?

GGTG.{18,18}CCAA.{17,17}TTAT

Thanks!

2

There is no built-in function to go from Regular expression to string expression, only the opposite:

StringPattern`PatternConvert

The equivalent pattern would be:

patt = "GGTG" ~~ Repeated[Except["\n", _], {18, 18}] ~~ "CCAA" ~~ 
   Repeated[Except["\n", _], {17, 17}] ~~ "TTAT";

You can try out:

StringMatchQ["GGTG123456789012345678CCAA12345878901234567TTAT", patt]
StringMatchQ["GGTG123456789012345678CCAA123458789012345678TTAT", patt]
StringMatchQ["GGTG12345678901234567CCAA123458789012345678TTAT", patt]
StringMatchQ["GGTG12345678901234567CCAA123458789012345678TTATX", patt]
3

Also available in the WFR ToRegularExpression.

4

Thank you for the example.

I tested RegularExpression and StringExpression against one of my genomic computations which checks 2773 different patterns against several chromosomes. In these tests, the chromosome is 35.7M characters.

Here are two examples of the 2773 match sequences for the RegularExpression test:

GGTG.{35,35}TTAT
GGTG.{13,13}CCAA.{86,86}TTAT

Here are the timing results:

read "EM03 chr 1 F parts clusters.mx.gz" (31.7237MB) (2.05 seconds)
r, k = 4713, 123 (24.5 seconds)
r, k = 9426, 311 (36.4 seconds)
r, k = 14139, 570 (50.1 seconds)
r, k = 18852, 792 (42.9 seconds)
r, k = 23565, 1123 (1.07 minutes)
r, k = 28278, 1429 (59.8 seconds)
r, k = 32991, 1767 (1.10 minutes)
r, k = 37704, 2072 (59.6 seconds)
r, k = 42417, 2415 (1.13 minutes)
r, k = 47130, 2773 (1.20 minutes)
finished cluster vetting r, k = 47132, 2773 in 9.05 minutes

Here are the same two match sequences for the StringExpression test:

GGTG~~Repeated[_,{35,35}]~~TTAT
GGTG~~Repeated[_,{13,13}]~~CCAA~~Repeated[_,{86,86}]~~TTAT

Here are the timing results:

read "EM03 chr 1 F parts clusters.mx.gz" (31.7237MB) (2.01 seconds)
r, k = 4713, 123 (1.64 minutes)
r, k = 9426, 311 (2.86 minutes)
r, k = 14139, 570 (4.06 minutes)
r, k = 18852, 792 (3.46 minutes)
r, k = 23565, 1123 (5.28 minutes)
r, k = 28278, 1429 (4.89 minutes)
r, k = 32991, 1767 (5.56 minutes)
r, k = 37704, 2072 (4.97 minutes)
r, k = 42417, 2415 (5.58 minutes)
r, k = 47130, 2773 (5.80 minutes)
finished cluster vetting r, k = 47132, 2773 in 44.1 minutes