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[WSS16] Hierarchical Clustering of Biological Data [WMP17]

Carlos Muñoz, Wolfram|Alpha
Posted 8 years ago
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POSTED BY: Carlos Muñoz
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Do they have the corresponding genome sequences for those amino acid sequences? If so, one could put together images via Chaos Game Representation and use various methods to try to cluster them. There's CGR code in this Community post.
POSTED BY: Daniel Lichtblau

I guess the genomes are in the NCBI server, I just read about CGR and it looks very interesting, I guess it will take into account patterns that edit distance (which ClusteringTree uses) doesn't see. I will play round with that idea and post the results.
POSTED BY: Carlos Muñoz

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