Hi Ashley,
I start using your raster image. Here is a simple way to extract the trajectory:
img0 = Import["http://community.wolfram.com//c/portal/getImageAttachment?filename=image.png&userId=1533207"];
img1 = ImagePad[ImageCrop[Binarize@img0], {{0, 0}, {0, -20}}];
img2 = Dilation[Opening[img1, 2], 2];
img3 = Thinning[img2];
HighlightImage[img1, img3]
This gives the trajectory as an image (here in red as an overlay):

You probably rather want the trajectory as points along a line, then try:
trajectoryPoints = PixelValuePositions[img3, 1];
order = Last[FindShortestTour[trajectoryPoints]];
Graphics[Line[trajectoryPoints[[Rest@order]]]]
But I guess it is better to start out using data points instead of a raster image.
Regards -- Henrik