SequenceIndex is just a value given to this particular id attribute. Id attributes are used in a lot of different places - usually websites and are often references for javascript or css files. The id attribute is familiar to most people from HTML.
If you can't find something in the documentation above, you're probably lookin for information about XML itself, not for information on Mathematica's XML templating language. It's important to be familiar with XML before using this XML templating language. As far as I can see, the documentation above isn't missing anything.
Here's a short tutorial on how id is commonly used in webpages:
http://www.w3schools.com/tags/att_global_id.asp