I am currently running jqueries from a sql server and having them display on a webpage. Is there a way to have a visualization from Mathematica using this data to display?
The easiest way to integrate Mathematica graphics into a webpage is to create an APIFunction.
http://reference.wolfram.com/language/ref/APIFunction.html
http://www.wolfram.com/language/fast-introduction-for-programmers/cloud-deployment/
You can create an APIFunction that takes some data and produces a visualization. Then you can use this API in your javascript.