There are two types of quotation marks you can get when importing text: those which Mathematica uses to form strings and other non-standard which cannot be used for that purpose. Both, when being inside the text, will parse correctly during import and will cause no trouble to your strings in general. Here is an example of standard quotation marks:
text1 = StringTake[Import["http://en.wikipedia.org/wiki/Albert_Einstein"], {2012, 2123}]

If you copy the output and paste in notebook you will see the imported string structure it has backwards slash preceding the quotation mark to insure that there will be no string splitting on that mark:

You can do your string processing in a usual way being aware of these structures. If you still intend to get rid of them, the following will do:
StringReplace[text1, "\"" -> " ~QUOTE~ "]

Here is an example of none-standard quotation marks:
text2 = StringTake[Import["http://www.goodreads.com/quotes"], {520, 590}]

Again if you copy the output and paste in notebook you will see the imported string structure these quotation marks cannot split/from a string, so they do not need backwards slash. So once again you can do your string processing in a usual way being aware of these structures. If you still intend to get rid of them, same trick will work:
StringReplace[text2, {"\[OpenCurlyDoubleQuote]" -> " ~OPEN QUOTE~ ", "\[CloseCurlyDoubleQuote]" -> " ~CLOSE QUOTE~ " }]

You can also replace them with space
" " or empty string
"". For more take a look at StringCases and RegularExpression.