Oh, I see where the problem is. You might want to try the two column data set and Import it like so:
dataset = SemanticImport["~/Desktop/cleandata.csv", {"Real", "Real"}, "Dataset", HeaderLines -> 1, Delimiters -> ",", MissingDataRules -> {"." -> Missing[], "" -> Missing[]}];
or alternatively like so:
dataset = SemanticImport["~/Desktop/cleandata.csv", Automatic, "Dataset", HeaderLines -> 1, Delimiters -> ",", MissingDataRules -> {"." -> Missing[], "" -> Missing[]}];
Cheers,
Marco