I'm sure there are other translations out there, but this one turned up via a quick Google search:
http://people.reed.edu/~wieting/mathematics537/sideriusnuncius.pdf
If you scroll a little over half way through the document, you will see a number of his sketches. His description of time is a bit vague so I estimated about 6Pm Italy time (e.g. TimeZone -> 1);
JupiterSatellites[DateObject[{1610, 1, 13, 18, 0, 0}, TimeZone -> 1]]


This gives a view almost identical to what he described for Jan 13, 1610. Most of his observations refer to the "first hour of the night" and given its January, I'm assuming 6 PM local time would be a reasonable guess. Keep in mind that Galileo's telescope was very crude so its resolution was poor. If 2 moons were very close, he may not have been able to resolve them so this may appear to result in a discrepancy between what he describes and what the calculation show. But all the test cases I've done seem to be quite close.