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[CALL] Reddit DataViz Battle JAN2018: Visualize the Growth Rates of Algae

POSTED BY: Vitaliy Kaurov
18 Replies
Posted 7 years ago

I am just now reading this and amazed at the broad nature of the responses! Just to throw out a little life science out there - I think the reason the temperatures effect on the final division rates in a much more apparent way is because it is linear in nature while the lux values actually behave in a cyclical way to stimulate the divisions through simulating activity/rest cycles most biological life requires. It may be interesting to analyze or visualize how these cycles effect the growth patterns in some way. Perhaps I will take a look at it later this week.

Keep up the good work guys!

POSTED BY: William Duhe

Yes I like this version very much! Feel free to update you actual post if you'd like, and/or post it on Reddit.

POSTED BY: Vitaliy Kaurov

Thank you Vitaliy! And yes are correct, we can do a double-dendrogram plot:

HeatmapPlot[Transpose[Rest /@ sdata[[3 ;; -1]]], 
 Map[Row[{"temp:", Style[#[[1]], Bold, Purple], ", lux:", Style[#[[2]], Bold, Purple]}] &, Transpose[Rest /@ sdata[[1 ;; 2]]]], 
 First /@ sdata[[3 ;; -1]],
 DistanceFunction -> {EuclideanDistance, EuclideanDistance}, 
 Dendrogram -> {True, True}, ImageSize -> 1000]

enter image description here

This plot seems more informative than the first one I posted. Note the grouping of the temperature and lux pairs becomes the same as in the raw data.

POSTED BY: Anton Antonov

Awesome, Anton, thank you! Hierarchical clustering did also crossed my mind, nice execution! From the option

Dendrogram -> {True, False}

I guess that one can add another "orthogonal" dendogram for columns with the option set to {True, True}, is that correct? Similar to this one:

https://www.r-bloggers.com/drawing-heatmaps-in-r

enter image description here

POSTED BY: Vitaliy Kaurov

Scatter plot slices of temperature dynamics: http://community.wolfram.com/groups/-/m/t/1261948

Let me know if you cannot see the image. It is in .SVG format. Click on image or here to zoom. Right-click to download. The graphics is in .SVG format, please make sure your browser supports viewing it. .SVG is a vector format and allows crisp resolution-independent images. Just in case at the link above the same image is provided also in .PNG foramt


enter image description here

POSTED BY: Vitaliy Kaurov
POSTED BY: Anton Antonov

Awesome! I was waiting for someone to use Machine Learning on this somehow. And your Radar Chart Package expresses the idea perfectly.

POSTED BY: Vitaliy Kaurov
Posted 7 years ago

Intraspecies comparison using RadarChart: http://community.wolfram.com/groups/-/m/t/1260507

enter image description here

POSTED BY: Diego Zviovich

Neat idea, Henrik! I was also considering this Intensity "phase space" as I call it, but your coloring for temperature is much more innovative than my idea. Thank you!

POSTED BY: Vitaliy Kaurov

Beautiful work, thank you for taking the challenge! And thank you very for submitting to Reddit! BTW could "negative value for divisions per day" mean that population is shrinking? Basically death rate > birth rate... assuming they start with some substantial initial population.

POSTED BY: Vitaliy Kaurov

Stunning, I also love bubble charts! I was actually thinking of one but yours is much better. Thank you!

POSTED BY: Vitaliy Kaurov

Thanks @l van Veen - I opted for a relative change bar chart to show this!

Growth Rate in "Intensity Space": http://community.wolfram.com/groups/-/m/t/1258281

enter image description here

POSTED BY: Henrik Schachner

Very Nice. I also like Sanders (and Vitaly) but I noticed with Sanders approach that some algae react opposite to the LUX. With your approach this is not obvious but could be highlighted perhaps. EG. the ellipsoidia is lower with 2500K and higher with 5000K The oculata is the other way around. I don't know if it is really relevant but Sander's approach (less intuitive (for me)) shows this very nicely. Your approach for me is more intuitive. Perhaps a Color code on the top of the bars might indicate this pattern? Just a thought :)

POSTED BY: l van Veen

Population - pyramid like visualization : http://community.wolfram.com/groups/-/m/t/1258056

enter image description here

Heatmap of inter- and intra- species comparison: http://community.wolfram.com/groups/-/m/t/1257577

enter image description here

POSTED BY: Vitaliy Kaurov
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